- Version 1.3.1.0 (August 26, 2005):
- Bugs Fixed:
- Fixed a bug where sometimes gene names weren't written to a .gps grid file.
- Version 1.3.0.8 (August 22, 2005):
- New Features:
- Added support for Agilent Arrays:
- can now specify one large block
- can write results in Agilent Results File format
- Now writes the background computation method into the results file header.
- Added support for multiple jog hints per block.
- Bugs Fixed:
- Eliminated a spurious error message "Error opening <gal file>" when saving results.
- Fixed a bug with high resolution images that caused spot finding to fail with "Can't find pattern consistent with grid layout."
- Changed error message dialogs to be modal.
- Fixed a bug in reading gal files. If a row had no gene name or id, it would use the name or id from the previous row rather than reading a blank name or id.
- Fixed a bug in reading information from a TIFF file header.
- Fixed a bug that caused the information toolbar to not report results until you'd edited the grid or viewed the results table.
- Fixed a bug that caused the list of image names to be incorrect when opening a grid with images whose wavelengths could not be determined.
- Fixed a bug in the results table that caused erroneous rows to display on arrays with blocks of more than 256 rows e.g. Agilent arrays.
- Version 1.3.0.6 (May 13, 2005):
- Bugs Fixed:
- When importing gene names into a grid, SpotReader wouldn't always save the Gene Names into the .gps file.
- Version 1.3.0.5 (April 19, 2005):
- Version 1.3.0.4 (April 11, 2005):
- New Features:
- Background Map Image:
- When viewing an array, you can now choose the background map tab to view the image with all the spots filtered out. This shows the variability in the background of the array, and is useful as a diagnostic.
- Morphological Opening Background:
- The Background and Saturation tab in the Array Parameters dialog now includes a Morphological Opening option. See the help file for an explanation.
- Scatter Plot:
- You can now plot M vs. A.
- The scatter plot now plots negative values.
- The scatter plot includes a "hide flagged features" option.
- Flagged features are now plotted with the x symbol.
- Results Table:
- Added M and A to possible values to show in the results table.
- M and A are now written to the .sra results file format.
- Changed the GPR file format to list wavelengths in reverse order in the header.
- Changed circularity to an integer value in the GPR file.
- Bugs Fixed:
- Fixed the sluggishness when editing a grid with one very large block.
- Fixed a bug with naming grid files when the folder chosen to save the grid was read-only. (The program saves the grid in the folder with the database file in this case.)
- Fixed a bug where the program would waste time reading an entire gene list file, even though it couldn't understand its format. It now reports an error and stops trying.
- Fixed an obscure bug where the program would confuse grids after creating a new grid from an existing grid.
- Fixed bug where it would create features that were too large in certain rare circumstances.
- Fixed bug in decompression algorithm that caused it to fail to open certain compressed tiff files.
- Version 1.2 History
- Version 1.1 History
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